python3: update 3.12.6 -> 3.13.0

License-update: copyright years

Update 0001-Makefile.pre-use-qemu-wrapper-when-gathering-profile.patch
to only include tests that do not fail under qemu (following upstream
change that also no longer obscures failures).

Drop
0001-gh-107811-tarfile-treat-overflow-in-UID-GID-as-failu.patch
(backport)
0001-python3-use-cc_basename-to-replace-CC-for-checking-c.patch
(fixed upstream)
0020-configure.ac-setup.py-do-not-add-a-curses-include-pa.patch
(code completely rewritten upstream)
cgi_py.patch
(cgi and cgitb modules removed upstream)

Add fix-armv5.patch
(address armv5 crashes)

Modules removed in 3.13 (look for 'important removals'):
https://docs.python.org/3/whatsnew/3.13.html
Manifest updated accordingly.

Add an explicit dependency on libatomic (needed on mips
and ppc), as upstream has explicitly switched it off
in cross builds. It's a no-op on other targets.

Fcntl relocated to python3-core by the manifest script.

(From OE-Core rev: 0b49c9aa31279ecda565cc66b63d1d61723b37b8)

Signed-off-by: Alexander Kanavin <alex@linutronix.de>
Signed-off-by: Richard Purdie <richard.purdie@linuxfoundation.org>

meta/recipes-devtools/python/python3/crosspythonpath.patch

@@ -1,4 +1,4 @@
-From 5b66463c10fec1440e977d5a21a0167862d6d79c Mon Sep 17 00:00:00 2001
+From 8840438e73e43b99bc9c83896a5f950e4259738f Mon Sep 17 00:00:00 2001
 From: Ricardo Ribalda <ricardo@ribalda.com>
 Date: Tue, 18 Nov 2014 03:35:33 -0500
 Subject: [PATCH] configure.ac: add CROSSPYTHONPATH into PYTHONPATH for
@@ -14,16 +14,15 @@ Upstream-Status: Inappropriate [OE-Core integration specific]
 Credits-to: Mark Hatle <mark.hatle@windriver.com>
 Credits-to: Jackie Huang <jackie.huang@windriver.com>
 Signed-off-by: Ricardo Ribalda <ricardo@ribalda.com>
-
 ---
  configure.ac | 2 +-
  1 file changed, 1 insertion(+), 1 deletion(-)
 
 diff --git a/configure.ac b/configure.ac
-index cb9e198..d81c19a 100644
+index 58f5407..5101806 100644
 --- a/configure.ac
 +++ b/configure.ac
-@@ -165,7 +165,7 @@ AC_ARG_WITH([build-python],
+@@ -164,7 +164,7 @@ AC_ARG_WITH([build-python],
      dnl Build Python interpreter is used for regeneration and freezing.
      ac_cv_prog_PYTHON_FOR_REGEN=$with_build_python
      PYTHON_FOR_FREEZE="$with_build_python"