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python-numpy: update to 1.14.1
Drop backported 0001-BUG-fix-infinite-loop-when-creating-np.pad-on-an-emp.patch. Drop 0001-BUG-fix-infinite-loop-when-creating-np.pad-on-an-emp.patch as upstream is using os.path.basename() instead now. License-Update: License.txt file was update to list licenses of individual components; not all of them are 3-clause BSD. (From OE-Core rev: c70d1c07e4e697156bd49c43e2cc800f3085b182) Signed-off-by: Alexander Kanavin <alexander.kanavin@linux.intel.com> Signed-off-by: Ross Burton <ross.burton@intel.com> Signed-off-by: Richard Purdie <richard.purdie@linuxfoundation.org>
This commit is contained in:
Alexander Kanavin
committed by
Richard Purdie
Richard Purdie
parent
d1d088db28
commit
e5f5aa5604
@@ -1,45 +0,0 @@
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From 4170b98e0d5864ef4db1c5704a6e9428c3be9fb8 Mon Sep 17 00:00:00 2001
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From: Iryna Shcherbina <ishcherb@redhat.com>
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Date: Thu, 24 Aug 2017 18:01:43 +0200
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Subject: [PATCH] BUG: fix infinite loop when creating np.pad on an empty array
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Upstream-Status: Backport [https://github.com/numpy/numpy/pull/9599/commits/6f9ea0abbd305d53f9017debab3a3a591fe0e249]
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CVE: CVE-2017-12852
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Signed-off-by: Dengke Du <dengke.du@windriver.com>
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---
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numpy/lib/arraypad.py | 3 +++
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numpy/lib/tests/test_arraypad.py | 4 ++++
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2 files changed, 7 insertions(+)
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diff --git a/numpy/lib/arraypad.py b/numpy/lib/arraypad.py
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index 2dad99c..294a689 100644
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--- a/numpy/lib/arraypad.py
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+++ b/numpy/lib/arraypad.py
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@@ -1406,6 +1406,9 @@ def pad(array, pad_width, mode, **kwargs):
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newmat = _append_min(newmat, pad_after, chunk_after, axis)
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elif mode == 'reflect':
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+ if narray.size == 0:
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+ raise ValueError("There aren't any elements to reflect in `array`")
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+
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for axis, (pad_before, pad_after) in enumerate(pad_width):
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# Recursive padding along any axis where `pad_amt` is too large
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# for indexing tricks. We can only safely pad the original axis
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diff --git a/numpy/lib/tests/test_arraypad.py b/numpy/lib/tests/test_arraypad.py
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index 056aa45..0f71d32 100644
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--- a/numpy/lib/tests/test_arraypad.py
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+++ b/numpy/lib/tests/test_arraypad.py
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@@ -1014,6 +1014,10 @@ class ValueError1(TestCase):
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assert_raises(ValueError, pad, arr, ((-2, 3), (3, 2)),
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**kwargs)
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+ def test_check_empty_array(self):
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+ assert_raises(ValueError, pad, [], 4, mode='reflect')
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+ assert_raises(ValueError, pad, np.ndarray(0), 4, mode='reflect')
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+
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class ValueError2(TestCase):
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def test_check_negative_pad_amount(self):
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--
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2.8.1
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@@ -1,23 +1,24 @@
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From cc2ce6d8b6a3e6e2c8874896c10897034a80cd4f Mon Sep 17 00:00:00 2001
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From c8c6649b29a08f82e1d6761a6d62ce5f632313c5 Mon Sep 17 00:00:00 2001
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From: Alexander Kanavin <alex.kanavin@gmail.com>
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Date: Thu, 10 Dec 2015 13:20:30 +0200
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Subject: [PATCH] Don't search /usr and so on for libraries by default to avoid
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host contamination.
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Subject: [PATCH 1/3] Don't search /usr and so on for libraries by default to
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avoid host contamination.
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Upstream-Status: Inappropriate (As the code stands, this is a hack)
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Signed-off-by: Ross Burton <ross.burton@intel.com>
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Signed-off-by: Alexander Kanavin <alex.kanavin@gmail.com>
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---
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numpy/distutils/system_info.py | 50 +++++-------------------------------------
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1 file changed, 6 insertions(+), 44 deletions(-)
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Index: numpy-1.13.1/numpy/distutils/system_info.py
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===================================================================
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--- numpy-1.13.1.orig/numpy/distutils/system_info.py
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+++ numpy-1.13.1/numpy/distutils/system_info.py
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@@ -211,51 +211,13 @@ if sys.platform == 'win32':
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default_x11_lib_dirs = []
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default_x11_include_dirs = []
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diff --git a/numpy/distutils/system_info.py b/numpy/distutils/system_info.py
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index bea120c..544e056 100644
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--- a/numpy/distutils/system_info.py
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+++ b/numpy/distutils/system_info.py
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@@ -262,51 +262,13 @@ if sys.platform == 'win32':
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add_system_root(os.path.join(conda_dir, 'Library'))
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else:
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- default_lib_dirs = libpaths(['/usr/local/lib', '/opt/lib', '/usr/lib',
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- '/opt/local/lib', '/sw/lib'], platform_bits)
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@@ -29,10 +30,7 @@ Index: numpy-1.13.1/numpy/distutils/system_info.py
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- '/opt/local/include', '/sw/include',
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- '/usr/include/suitesparse']
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- default_src_dirs = ['.', '/usr/local/src', '/opt/src', '/sw/src']
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+ default_lib_dirs = libpaths(['/deadir/lib'], platform_bits)
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+ default_include_dirs = ['/deaddir/include']
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+ default_src_dirs = ['.', '/deaddir/src']
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-
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- default_x11_lib_dirs = libpaths(['/usr/X11R6/lib', '/usr/X11/lib',
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- '/usr/lib'], platform_bits)
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- default_x11_include_dirs = ['/usr/X11R6/include', '/usr/X11/include',
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@@ -67,8 +65,15 @@ Index: numpy-1.13.1/numpy/distutils/system_info.py
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- finally:
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- if tmp is not None:
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- tmp.close()
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+ default_lib_dirs = libpaths(['/deadir/lib'], platform_bits)
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+ default_include_dirs = ['/deaddir/include']
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+ default_src_dirs = ['.', '/deaddir/src']
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+
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+ default_x11_lib_dirs = libpaths(['/deaddir/lib'], platform_bits)
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+ default_x11_include_dirs = ['/deaddir/include']
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if os.path.join(sys.prefix, 'lib') not in default_lib_dirs:
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default_lib_dirs.insert(0, os.path.join(sys.prefix, 'lib'))
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--
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2.16.1
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@@ -1,30 +0,0 @@
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From c560abff71f98a39a7401f08c2c13dad9ae7f15f Mon Sep 17 00:00:00 2001
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From: Hongxu Jia <hongxu.jia@windriver.com>
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Date: Thu, 25 Feb 2016 01:23:32 -0500
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Subject: [PATCH] remove build path in comments
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It has build path in comments, so remove it.
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Upstream-Status: Inappropriate [openembedded specific]
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Signed-off-by: Hongxu Jia <hongxu.jia@windriver.com>
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---
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numpy/distutils/misc_util.py | 2 +-
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1 file changed, 1 insertion(+), 1 deletion(-)
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diff --git a/numpy/distutils/misc_util.py b/numpy/distutils/misc_util.py
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index 345e60f..dafb068 100644
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--- a/numpy/distutils/misc_util.py
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+++ b/numpy/distutils/misc_util.py
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@@ -2254,7 +2254,7 @@ def generate_config_py(target):
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from distutils.dir_util import mkpath
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mkpath(os.path.dirname(target))
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f = open(target, 'w')
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- f.write('# This file is generated by %s\n' % (os.path.abspath(sys.argv[0])))
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+ f.write('# This file is generated by %s\n' % (os.path.abspath(sys.argv[0]).replace(os.path.abspath('../'),'')))
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f.write('# It contains system_info results at the time of building this package.\n')
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f.write('__all__ = ["get_info","show"]\n\n')
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for k, i in system_info.saved_results.items():
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--
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1.9.1
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@@ -1,19 +1,17 @@
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SUMMARY = "A sophisticated Numeric Processing Package for Python"
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SECTION = "devel/python"
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LICENSE = "BSD-3-Clause"
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LIC_FILES_CHKSUM = "file://LICENSE.txt;md5=1002b09cd654fcaa2dcc87535acd9a96"
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LICENSE = "BSD-3-Clause & BSD-2-Clause & PSF & Apache-2.0 & BSD"
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LIC_FILES_CHKSUM = "file://LICENSE.txt;md5=fc53b33304171d132128ebe82ea4a645"
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SRCNAME = "numpy"
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SRC_URI = "https://github.com/${SRCNAME}/${SRCNAME}/releases/download/v${PV}/${SRCNAME}-${PV}.tar.gz \
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file://0001-Don-t-search-usr-and-so-on-for-libraries-by-default-.patch \
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file://remove-build-path-in-comments.patch \
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file://fix_shebang_f2py.patch \
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file://0001-BUG-fix-infinite-loop-when-creating-np.pad-on-an-emp.patch \
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${CONFIGFILESURI} "
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SRC_URI[md5sum] = "6d459e4a24f5035f720dda3c57716a92"
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SRC_URI[sha256sum] = "de020ec06f1e9ce1115a50161a38bf8d4c2525379900f9cb478cc613a1e7cd93"
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SRC_URI[md5sum] = "0e09f20f62ab9f8a02cb7bd3fd023482"
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SRC_URI[sha256sum] = "8708a775be9a9a457b80a49193c57bd9d51a8a195ed1f1c4b8e89eaf3aa646ee"
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UPSTREAM_CHECK_URI = "https://github.com/numpy/numpy/releases"
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UPSTREAM_CHECK_REGEX = "(?P<pver>\d+(\.\d+)+)\.tar"
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@@ -1,18 +1,17 @@
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SUMMARY = "A sophisticated Numeric Processing Package for Python"
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SECTION = "devel/python"
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LICENSE = "BSD-3-Clause"
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LIC_FILES_CHKSUM = "file://LICENSE.txt;md5=1002b09cd654fcaa2dcc87535acd9a96"
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LICENSE = "BSD-3-Clause & BSD-2-Clause & PSF & Apache-2.0 & BSD"
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LIC_FILES_CHKSUM = "file://LICENSE.txt;md5=fc53b33304171d132128ebe82ea4a645"
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SRCNAME = "numpy"
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SRC_URI = "https://github.com/${SRCNAME}/${SRCNAME}/releases/download/v${PV}/${SRCNAME}-${PV}.tar.gz \
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file://0001-Don-t-search-usr-and-so-on-for-libraries-by-default-.patch \
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file://remove-build-path-in-comments.patch \
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file://fix_shebang_f2py.patch \
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file://0001-BUG-fix-infinite-loop-when-creating-np.pad-on-an-emp.patch \
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${CONFIGFILESURI} "
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SRC_URI[md5sum] = "c1d433e5973e548809e80c9118474b73"
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SRC_URI[sha256sum] = "4c6b4eef790528bebb7ec9590d74cc193868940fe68e4109a91c196df72d8094"
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${CONFIGFILESURI} \
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"
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SRC_URI[md5sum] = "0e09f20f62ab9f8a02cb7bd3fd023482"
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SRC_URI[sha256sum] = "8708a775be9a9a457b80a49193c57bd9d51a8a195ed1f1c4b8e89eaf3aa646ee"
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UPSTREAM_CHECK_URI = "https://github.com/numpy/numpy/releases"
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UPSTREAM_CHECK_REGEX = "(?P<pver>\d+(\.\d+)+)\.tar"
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