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If you abort a build mid execution of the staging extend_sysroot function there are currently races and cleanup of that function may fail. This change splits the code into separate phases so that the manifests are manipulated before files are installed, meaning we should be able to reverse actions if builds fail, crash or are interrupted. (From OE-Core rev: fc504b6b8538453d2f058d7cc69be098f52f8091) Signed-off-by: Richard Purdie <richard.purdie@linuxfoundation.org>